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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115601052_115618306_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115601052 - 115618306
Intron Length:
17255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TTTGGCTGAAAC
Flanking Amino Acid:
QIQQMKRLEQEKAADDEVQK
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
64.3
47.1
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.5
0.71
0.8
75.6
33
Minor 5ss
30.2
-2.3
3.2
38.6
46.5
Minor BPS
49.7
-0
2.1
68.51
42.7

Associated Gene:

Gene:
NCOA1
Ensembl Gene ID:
ENSAPLG00000013551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014179
115596604 - 115652068
55465