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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115618402_115623964_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115618402 - 115623964
Intron Length:
5563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
ACCCTCTGACCA
Flanking Amino Acid:
KESLGPLLLEALDGFFFVVN
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
87.8
0.85
0.6
85.2
22.2
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
45.8
-0.3
1.7
51.27
40.4

Associated Gene:

Gene:
NCOA1
Ensembl Gene ID:
ENSAPLG00000013551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014179
115596604 - 115652068
55465