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Intron Name: Anas_platyrhynchos_platyrhynchos_3_115624143_115625953_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115624143 - 115625953

Intron Length:

1811

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTGCTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

TCCTCCTTTCTC

Flanking Amino Acid:

FVKNLLPKSLVNGVPWPQEA

Intron Amino Acid Position:

176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.7

33.7

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

77.4

0.62

0.9

68.8

37.2

Minor 5ss

32.8

-2

2.9

39.4

46.1

Minor BPS

42.1

-0.6

3.6

61.78

44.3

Associated Gene:

Gene:

NCOA1

Ensembl Gene ID:

ENSAPLG00000013551

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014179

115596604 - 115652068

55465