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Intron Name: Anas_platyrhynchos_platyrhynchos_3_115627687_115628523_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115627687 - 115628523

Intron Length:

837

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACGGGC

5'SS Class:

major

3'SS Sequence:

CTGTCTCCCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCTAA

U12 Branch Point Sequence:

CTTTTTTGGGCT

Flanking Amino Acid:

PSYAKQLFQEVMTRGTAFSP

Intron Amino Acid Position:

315

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.4

0.58

1.2

64.8

41.3

Major BPS

59.6

0.24

1.3

58.7

39.9

Major PPT

75.9

0.58

0.8

73.4

31.5

Minor 5ss

35.1

-1.7

3.6

50.2

46.4

Minor BPS

40.8

-0.6

3.4

70.45

41.3

Associated Gene:

Gene:

NCOA1

Ensembl Gene ID:

ENSAPLG00000013551

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014179

115596604 - 115652068

55465