Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115628672_115629275_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115628672 - 115629275

Intron Length:

604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTCCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGTTGAC

U12 Branch Point Sequence:

TCTTCCTTCCCT

Flanking Amino Acid:

PFIMGIHVIDRDHGMLSPQE

Intron Amino Acid Position:

364

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

84.3

29.6

Major BPS

0.22

1.2

52.4

43.3

Major PPT

73.3

0.53

70.1

36.4

Minor 5ss

42.7

-0.8

58.2

46.4

Minor BPS

47.4

-0.1

3.6

83.33

44.1

Associated Gene:

Gene:

NCOA1

Ensembl Gene ID:

ENSAPLG00000013551

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014179

115596604 - 115652068

55465