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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115630643_115634104_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115630643 - 115634104
Intron Length:
3462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
AAAACCCAAACC
Flanking Amino Acid:
EEVKLESQGQFAAELEQLDQ
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
71.4
40.3
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
88.2
0.86
0.6
87.5
22.7
Minor 5ss
29.1
-2.4
2.7
33
41.9
Minor BPS
46.6
-0.2
2
56.98
40.6

Associated Gene:

Gene:
NCOA1
Ensembl Gene ID:
ENSAPLG00000013551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014179
115596604 - 115652068
55465