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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115635324_115637345_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115635324 - 115637345
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
CTAACCCTAACC
Flanking Amino Acid:
TGPNPFPPDTGMSELEMGVP
Intron Amino Acid Position:
906

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.9
33.5
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
78
0.63
0.7
69.7
31.1
Minor 5ss
33.9
-1.8
3.5
49.9
46.5
Minor BPS
59.7
0.28
1.8
69.11
41.8

Associated Gene:

Gene:
NCOA1
Ensembl Gene ID:
ENSAPLG00000013551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014179
115596604 - 115652068
55465