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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115637473_115640316_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115637473 - 115640316
Intron Length:
2844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
CTTGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTCAC
U12 Branch Point Sequence:
CCAACGTTCACG
Flanking Amino Acid:
MNRGALSKPDDPCITSQLDE
Intron Amino Acid Position:
948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
62.6
0.31
1.2
66.7
39.9
Major PPT
75.9
0.58
0.8
69.8
31
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
41.7
-0.7
2.4
44.23
47.4

Associated Gene:

Gene:
NCOA1
Ensembl Gene ID:
ENSAPLG00000013551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014179
115596604 - 115652068
55465