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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115640486_115642296_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115640486 - 115642296
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAGGGG
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
RALGIDKLVQGGGLEALTER
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
52.4
41.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.3
0.7
0.7
73.7
31.3
Minor 5ss
26.6
-2.7
3.7
37.3
47.4
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
NCOA1
Ensembl Gene ID:
ENSAPLG00000013551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014179
115596604 - 115652068
55465