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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115642615_115642745_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115642615 - 115642745
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
CTCTCCTGAGTT
Flanking Amino Acid:
LQQRLQGQQQLIHQNRQAIL
Intron Amino Acid Position:
1111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
79.2
0.66
0.7
69.9
31
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
56.3
0.28
1.8
72.5
44.8

Associated Gene:

Gene:
NCOA1
Ensembl Gene ID:
ENSAPLG00000013551
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014179
115596604 - 115652068
55465