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Intron Name: Anas_platyrhynchos_platyrhynchos_3_115643948_115644908_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115643948 - 115644908

Intron Length:

961

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TGTCCTTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAT

U12 Branch Point Sequence:

CCTGGCTGATGC

Flanking Amino Acid:

QQNIFQYSGSGMGQQNEPAF

Intron Amino Acid Position:

1283

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.6

32.8

Major BPS

58.4

0.21

1.4

51.1

46.3

Major PPT

77.4

0.62

0.8

69.3

36.9

Minor 5ss

30.6

-2.2

3.4

39.4

46.5

Minor BPS

36.6

-1

2.2

41.94

45.1

Associated Gene:

Gene:

NCOA1

Ensembl Gene ID:

ENSAPLG00000013551

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014179

115596604 - 115652068

55465