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Intron Name: Anas_platyrhynchos_platyrhynchos_3_115645080_115645290_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

115645080 - 115645290

Intron Length:

211

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

ACA|GCAAGTAAG

5'SS Class:

major

3'SS Sequence:

CAGGGGGATTTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCGTTAC

U12 Branch Point Sequence:

GCTTCGTTACGT

Flanking Amino Acid:

KSWQQGAMGNRNVAIKGAAC

Intron Amino Acid Position:

1340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.4

66.6

44.9

Major BPS

58.9

0.22

1.3

51.3

43.9

Major PPT

48.2

-0.1

1.1

39.5

43.7

Minor 5ss

26.9

-2.6

3.7

40.2

Minor BPS

46.1

-0.2

2.5

67.9

48.7

Associated Gene:

Gene:

NCOA1

Ensembl Gene ID:

ENSAPLG00000013551

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014179

115596604 - 115652068

55465