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Intron Name: Anas_platyrhynchos_platyrhynchos_3_115650759_115651885_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115650759 - 115651885

Intron Length:

1127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTAAA

U12 Branch Point Sequence:

TCCCCGCTAAAA

Flanking Amino Acid:

LLKTEADGAQQVQQVQVFAD

Intron Amino Acid Position:

1420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.2

77.9

38.6

Major BPS

57.8

0.19

1.1

59.3

35.9

Major PPT

80.5

0.69

0.9

72.8

42.2

Minor 5ss

30.5

-2.2

2.5

33.4

41.8

Minor BPS

42.7

-0.5

2.3

54.61

43.7

Associated Gene:

Gene:

NCOA1

Ensembl Gene ID:

ENSAPLG00000013551

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014179

115596604 - 115652068

55465