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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115657148_115657494_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115657148 - 115657494
Intron Length:
347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
GCTCTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
GGTTTTTGAGCC
Flanking Amino Acid:
MEKGKSNSEDGVLAHLERLE
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.5
41.4
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
82.5
0.73
0.8
76.5
32.1
Minor 5ss
39.2
-1.2
3
50.7
46
Minor BPS
49.2
-0
1.7
60.48
38.5

Associated Gene:

Gene:
CENPO
Ensembl Gene ID:
ENSAPLG00000013501
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014052
115656949 - 115661681
4733