About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115657665_115658040_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115657665 - 115658040
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAAAG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
RAKLELQQKRLLEKEGVKTD
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.7
39.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
26.9
-2.6
2.7
23.2
36.9
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
CENPO
Ensembl Gene ID:
ENSAPLG00000013501
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014052
115656949 - 115661681
4733