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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115659024_115659569_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115659024 - 115659569
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTTGTCCGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
GTGTCCTGAAGT
Flanking Amino Acid:
GRRYQADQLQERFSDRLEGP
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
69.6
0.49
1
59.5
39
Major PPT
79.8
0.67
0.9
77.7
36.7
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
62.2
0.46
1.8
77.77
44.2

Associated Gene:

Gene:
CENPO
Ensembl Gene ID:
ENSAPLG00000013501
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014052
115656949 - 115661681
4733