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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115659889_115662618_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115659889 - 115662618
Intron Length:
2730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTTCTCTAATT
Flanking Amino Acid:
ESTGVMGNIQRGIPDAEDAQ
Intron Amino Acid Position:
1077

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
80.1
0.68
0.9
73.5
34.7
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
70.5
0.72
1.6
87
32.2

Associated Gene:

Gene:
ADCY3
Ensembl Gene ID:
ENSAPLG00000013028
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013606
115659796 - 115673152
13357