Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115676190_115676912_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115676190 - 115676912

Intron Length:

723

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGGGGA

5'SS Class:

strong_major

3'SS Sequence:

CTGTATCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

GTTGCTGTATCT

Flanking Amino Acid:

DMLGVKPGATRDEVNKAYRK

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.2

37.4

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

0.45

0.9

62.1

39.6

Minor 5ss

23.1

-3.1

3.2

43.5

Minor BPS

47.5

-0.1

2.3

71.96

45.3

Associated Gene:

Gene:

DNAJC27

Ensembl Gene ID:

ENSAPLG00000012805

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013347

115675057 - 115680822

5766