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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115677410_115677870_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115677410 - 115677870
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCC
5'SS Class:
major
3'SS Sequence:
TCTCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AGGTTCTGACCT
Flanking Amino Acid:
NVVFVVCANKIDCTKHRSVD
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
64.9
37.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
85.4
0.8
0.7
77
31.7
Minor 5ss
30.6
-2.2
3.5
42.1
44.9
Minor BPS
50.5
0.1
1.8
67.59
43.1

Associated Gene:

Gene:
DNAJC27
Ensembl Gene ID:
ENSAPLG00000012805
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013347
115675057 - 115680822
5766