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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115688245_115735484_R

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
115688245 - 115735484
Intron Length:
47240

Sequence Information:

Terminal Dinucleotides:
GT-CA
5'SS Sequence:
CAG|GTGCGAGGC
5'SS Class:
major
3'SS Sequence:
CACACCGCACGCA|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
CGGGCATTAAAA
Flanking Amino Acid:
SYESISKHNQGEAAR*
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
60.5
39
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
7.67
-2.4
3.9
20.6
23.5
Minor 5ss
24.3
-3
3.3
32.8
42.3
Minor BPS
47.7
-0.1
1.8
54.44
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022349
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037437
115688227 - 115742304
54078