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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115690319_115691562_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
115690319 - 115691562
Intron Length:
1244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTTGGGAGA
5'SS Class:
weak_major
3'SS Sequence:
TCCTCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CCCTGCTCACCG
Flanking Amino Acid:
VSLLFGVLAWGVCGCCGALR
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.1
0.19
1.3
52.6
45.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
80
0.67
0.7
72.3
32.3
Minor 5ss
26.2
-2.7
3
23.2
37.2
Minor BPS
41.3
-0.8
2.2
42.41
48.7

Associated Gene:

Gene:
EFR3B
Ensembl Gene ID:
ENSAPLG00000012384
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012931
115690234 - 115712005
21772