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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115692165_115693883_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115692165 - 115693883
Intron Length:
1719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
TGCCCTCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCGTGCTCACCC
Flanking Amino Acid:
LIRDVSRHRYGYVCIAMEAL
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.5
39.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
73.6
0.53
0.8
64.9
36.3
Minor 5ss
26
-2.8
3.4
30.5
42.8
Minor BPS
42.9
-0.5
2.2
49.56
47

Associated Gene:

Gene:
EFR3B
Ensembl Gene ID:
ENSAPLG00000012384
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043324
115689564 - 115711010
21447
ENSAPLT00000025492
115692058 - 115711112
19055
ENSAPLT00000012931
115690234 - 115712005
21772
ENSAPLT00000047627
115689583 - 115711889
22307