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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115703035_115703353_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115703035 - 115703353
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTGTTTCCATCT
Flanking Amino Acid:
NIKNAIKPVLIHLDNHSLWE
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
40.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
77.4
0.62
0.8
69.5
36.1
Minor 5ss
42
-0.9
2.8
53.9
43.5
Minor BPS
45.3
-0.2
2
68.1
43.1

Associated Gene:

Gene:
EFR3B
Ensembl Gene ID:
ENSAPLG00000012384
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047627
115689583 - 115711889
22307
ENSAPLT00000043324
115689564 - 115711010
21447
ENSAPLT00000025492
115692058 - 115711112
19055
ENSAPLT00000012931
115690234 - 115712005
21772