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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115705200_115705767_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115705200 - 115705767
Intron Length:
568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGGCTT
5'SS Class:
major
3'SS Sequence:
CTTGTCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GAGTTTTCAACG
Flanking Amino Acid:
MFQEAVIKTIGSFASTLPTY
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.5
42.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.8
0.6
0.8
73.7
31.3
Minor 5ss
29.8
-2.3
3.7
46.2
49.1
Minor BPS
50.9
-0.1
1.6
53.02
41.9

Associated Gene:

Gene:
EFR3B
Ensembl Gene ID:
ENSAPLG00000012384
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012931
115690234 - 115712005
21772