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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115705880_115707383_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115705880 - 115707383
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAACG
5'SS Class:
major
3'SS Sequence:
CTCTCCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
CTCTCCCTGACA
Flanking Amino Acid:
SQQSIEAGKAGENRNRLTQI
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
65.1
40.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
72.6
0.51
0.9
68.2
32.1
Minor 5ss
27.9
-2.5
2.7
24.8
36.2
Minor BPS
62.1
0.37
1.7
71.16
41.1

Associated Gene:

Gene:
EFR3B
Ensembl Gene ID:
ENSAPLG00000012384
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012931
115690234 - 115712005
21772