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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115709760_115709844_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115709760 - 115709844
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGAAGG
5'SS Class:
major
3'SS Sequence:
TTGCCTTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAG
U12 Branch Point Sequence:
GAGGTTTGAGCT
Flanking Amino Acid:
VPTFCQHIHEVIQMRQKEAP
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
62.6
43.6
Major BPS
54.7
0.12
1.7
57.1
49.4
Major PPT
77.8
0.63
0.8
73
31.8
Minor 5ss
26.4
-2.7
2.9
31.4
42.4
Minor BPS
43.7
-0.4
1.7
54.02
41.6

Associated Gene:

Gene:
EFR3B
Ensembl Gene ID:
ENSAPLG00000012384
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047627
115689583 - 115711889
22307
ENSAPLT00000043324
115689564 - 115711010
21447
ENSAPLT00000025492
115692058 - 115711112
19055
ENSAPLT00000012931
115690234 - 115712005
21772