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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115719953_115724153_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
115719953 - 115724153
Intron Length:
4201

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCAAGAAAT
5'SS Class:
major
3'SS Sequence:
TCGGGGAGGGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGGAG
U12 Branch Point Sequence:
TGAGTTTGGAGG
Flanking Amino Acid:
KEKEKKRKEKEKPWSLWSLW
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
68.2
42.6
Major BPS
49
-0
1.8
57.1
49.4
Major PPT
43.7
-0.3
1.2
33.6
39.8
Minor 5ss
26.1
-2.7
3.9
37
41.1
Minor BPS
40
-0.9
1.7
39.35
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012374
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012877
115719897 - 115724598
4702