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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11572232_11574229_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11572232 - 11574229
Intron Length:
1998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTCCTTTCAATT
Flanking Amino Acid:
HLQPRSITPLENEMTIDDGY
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
68.4
36.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
75.8
0.58
0.9
67.4
38
Minor 5ss
35.6
-1.6
3.5
47.4
48.2
Minor BPS
50
0.08
1.5
64.38
41.1

Associated Gene:

Gene:
GPCPD1
Ensembl Gene ID:
ENSAPLG00000008381
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045315
11553279 - 11594197
40919
ENSAPLT00000022439
11558710 - 11594197
35488
ENSAPLT00000008749
11552521 - 11593367
40847