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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115730606_115731738_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115730606 - 115731738
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGCGG
5'SS Class:
major
3'SS Sequence:
TTCCGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAG
U12 Branch Point Sequence:
GTTCCCTCCAGG
Flanking Amino Acid:
IEVLCEMDTEGGGWTVIQRR
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.5
0.3
1.3
46.3
49
Major BPS
41.5
-0.5
1.6
49.7
44
Major PPT
79.3
0.66
0.8
73.2
31.7
Minor 5ss
34.6
-1.7
3.5
47.8
47.7
Minor BPS
44.3
-0.5
2.3
53.98
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017924
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017496
115728216 - 115732470
4255