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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115736853_115737505_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115736853 - 115737505
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTCTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCCTTCTTATTT
Flanking Amino Acid:
RCKRCRSPSVSAMEKATSPP
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.9
0.76
0.7
77
31.7
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
55.7
0.26
1.6
66.23
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022349
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040445
115700953 - 115740920
39968
ENSAPLT00000037437
115688227 - 115742304
54078