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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115746921_115747832_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
115746921 - 115747832
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCTCGCAA
5'SS Class:
major
3'SS Sequence:
TCCCAGAGCTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
GAATCCTGAGCG
Flanking Amino Acid:
GALSLRPDRASSQGVTRAPP
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.3
45.1
42.9
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
57.7
0.17
1
53.8
40
Minor 5ss
26.8
-2.7
4
38.4
46.6
Minor BPS
50.5
-0.1
1.8
56.03
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021729
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047115
115746767 - 115748083
1317