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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11578424_11578656_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11578424 - 11578656
Intron Length:
233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
GCTATTATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGCTATTATT
Flanking Amino Acid:
RGAGNSTTTAKLAKVQENTI
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
77.5
0.62
0.9
73.8
40.3
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
49.9
0.07
2
76.42
40.6

Associated Gene:

Gene:
GPCPD1
Ensembl Gene ID:
ENSAPLG00000008381
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045315
11553279 - 11594197
40919
ENSAPLT00000022439
11558710 - 11594197
35488
ENSAPLT00000008749
11552521 - 11593367
40847