Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11578712_11580345_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11578712 - 11580345

Intron Length:

1634

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTACGTACA

5'SS Class:

major

3'SS Sequence:

TTGTTTTCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAA

U12 Branch Point Sequence:

CGGTTGTCAATG

Flanking Amino Acid:

IASLRNAASHGAAYVEFDVH

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.1

73.8

36.6

Major BPS

75.6

0.64

1.1

77.7

37.1

Major PPT

84.8

0.78

0.7

81.6

30.4

Minor 5ss

37.4

-1.4

2.9

47.6

41.1

Minor BPS

42.1

-0.7

2.2

43.17

Associated Gene:

Gene:

GPCPD1

Ensembl Gene ID:

ENSAPLG00000008381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022439

11558710 - 11594197

35488

ENSAPLT00000008749

11552521 - 11593367

40847

ENSAPLT00000045315

11553279 - 11594197

40919