Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115796576_115796751_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

115796576 - 115796751

Intron Length:

176

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGACG

5'SS Class:

major

3'SS Sequence:

GTTTCGCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCACAA

U12 Branch Point Sequence:

TTGCCCGGACCC

Flanking Amino Acid:

RALELGKFYQLAQQHREFYQ

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

63.1

Major BPS

53.3

0.08

1.1

37.5

Major PPT

72.1

0.5

0.9

62.4

39.8

Minor 5ss

25.7

-2.8

3.1

30.8

42.9

Minor BPS

44.2

-0.4

2.3

60.56

44.4

Associated Gene:

Gene:

FAM166C

Ensembl Gene ID:

ENSAPLG00000010916

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011359

115796387 - 115797980

1594