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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11580439_11582006_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11580439 - 11582006
Intron Length:
1568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTCTTTTCAAAG
Flanking Amino Acid:
DLTCCMAMKKKLDTEPLELF
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.5
37
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
79.3
0.66
1
81.7
27.5
Minor 5ss
35.9
-1.6
3.3
47.8
47.9
Minor BPS
52.3
-0
1.7
60.04
42.2

Associated Gene:

Gene:
GPCPD1
Ensembl Gene ID:
ENSAPLG00000008381
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045315
11553279 - 11594197
40919
ENSAPLT00000022439
11558710 - 11594197
35488
ENSAPLT00000008749
11552521 - 11593367
40847