About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115816958_115817509_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115816958 - 115817509
Intron Length:
552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACCGGC
5'SS Class:
major
3'SS Sequence:
CTCCCCCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATGG
Flanking Amino Acid:
NAKRDEMWKENINKCSIIWV
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
57.5
42.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79
0.65
0.7
72.5
25.6
Minor 5ss
36.8
-1.5
3.3
50.2
46.4
Minor BPS
46.4
-0.4
2.1
55.49
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012641
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013158
115815111 - 115821717
6607
ENSAPLT00000040680
115815111 - 115821717
6607
ENSAPLT00000038716
115814770 - 115819451
4682