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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115817729_115818045_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115817729 - 115818045
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TGCTGTGTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAG
U12 Branch Point Sequence:
GCTTCTTTCCCT
Flanking Amino Acid:
SRCILLKETTANDLSDKMGP
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
55.4
0.13
1.6
63.6
42.5
Major PPT
69.8
0.45
1
60.7
44.7
Minor 5ss
32.8
-2
2.7
42.4
38.3
Minor BPS
42.7
-0.4
3.6
71.8
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012641
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040680
115815111 - 115821717
6607
ENSAPLT00000038716
115814770 - 115819451
4682
ENSAPLT00000021164
115815111 - 115821717
6607
ENSAPLT00000013158
115815111 - 115821717
6607