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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115818253_115818564_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115818253 - 115818564
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCATGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAC
U12 Branch Point Sequence:
TCTGTCCCAACA
Flanking Amino Acid:
EAKIHLLTDEEWKEELKGLV
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.85
1
70.4
40
Major BPS
49.9
-0
1.2
43
37.8
Major PPT
71.9
0.49
0.9
66.5
34.4
Minor 5ss
27.4
-2.6
3.9
39.5
46.1
Minor BPS
48.2
-0.1
2
63.62
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012641
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040680
115815111 - 115821717
6607
ENSAPLT00000038716
115814770 - 115819451
4682
ENSAPLT00000021164
115815111 - 115821717
6607
ENSAPLT00000013158
115815111 - 115821717
6607