About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115818788_115819365_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115818788 - 115819365
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
PETRNGIEYLKNRLMGLKPD
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
72
34.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
76.1
0.59
0.8
73.2
31.8
Minor 5ss
36.8
-1.5
2.9
43.8
38
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012641
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038716
115814770 - 115819451
4682
ENSAPLT00000021164
115815111 - 115821717
6607
ENSAPLT00000013158
115815111 - 115821717
6607
ENSAPLT00000040680
115815111 - 115821717
6607