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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115825028_115825507_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115825028 - 115825507
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCA
5'SS Class:
major
3'SS Sequence:
TCTCCCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
GGGGTCTCACCT
Flanking Amino Acid:
YYLLEFLLWISTFVPSLVCW
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
66.7
39.1
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
75.5
0.57
0.7
69.5
24.3
Minor 5ss
28.1
-2.5
3.6
38.3
46.9
Minor BPS
44.6
-0.3
1.9
56.99
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012254
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036849
115823377 - 115831643
8267
ENSAPLT00000027594
115823377 - 115832608
9232
ENSAPLT00000012777
115823377 - 115832608
9232