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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115825585_115825886_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115825585 - 115825886
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAGGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
TCATCATCATCC
Flanking Amino Acid:
SIIYQDPTNKPPSSSASWFW
Intron Amino Acid Position:
238

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.8
88
22.6
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
79.6
0.67
0.9
72.8
37.5
Minor 5ss
23.6
-3
4.2
40.8
45.6
Minor BPS
47.3
-0.2
2
60.93
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012254
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012777
115823377 - 115832608
9232