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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11582898_11583663_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11582898 - 11583663
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTACT
5'SS Class:
major
3'SS Sequence:
TATTTATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TCTATTTTAATC
Flanking Amino Acid:
VTALKVKDHNASFKEEENSA
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
73.4
37.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
88
0.85
0.8
85.7
33.4
Minor 5ss
32
-2.1
2.9
40.1
40.7
Minor BPS
66.7
0.5
1.2
69.89
36.2

Associated Gene:

Gene:
GPCPD1
Ensembl Gene ID:
ENSAPLG00000008381
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045315
11553279 - 11594197
40919
ENSAPLT00000022439
11558710 - 11594197
35488
ENSAPLT00000008749
11552521 - 11593367
40847