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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115829717_115830134_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115829717 - 115830134
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACCC
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
GCTTGCTGATGT
Flanking Amino Acid:
GIKHGILPTQVVALSLLTAS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
68.6
36.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
72.4
0.5
0.9
68.7
31.7
Minor 5ss
27.8
-2.5
2.9
34.2
41.4
Minor BPS
42.8
-0.4
2.3
61.15
48.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012254
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036849
115823377 - 115831643
8267
ENSAPLT00000027594
115823377 - 115832608
9232
ENSAPLT00000012777
115823377 - 115832608
9232