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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115830226_115830408_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115830226 - 115830408
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
CCTTTGCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCTCACCCAACC
Flanking Amino Acid:
ELSKHGLALANLGAVSEVAA
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
66
40.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
75
0.56
0.8
69
31.6
Minor 5ss
28.4
-2.5
3.1
31.4
36.6
Minor BPS
44.2
-0.4
2
55.29
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012254
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012777
115823377 - 115832608
9232
ENSAPLT00000036849
115823377 - 115831643
8267
ENSAPLT00000027594
115823377 - 115832608
9232