About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115830984_115831200_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
115830984 - 115831200
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTGGAG
U12 Branch Point Sequence:
CTGCCCTTCTCT
Flanking Amino Acid:
QPTSVEEVREILEMARQRGK
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
36
-0.8
1.7
28.5
45.1
Major PPT
76.6
0.6
0.9
69.9
36.5
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
41.3
-0.5
3.6
68.94
47.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012254
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012777
115823377 - 115832608
9232