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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115831303_115832350_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
115831303 - 115832350
Intron Length:
1048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGCTC
5'SS Class:
major
3'SS Sequence:
TGTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTTTTGATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1.3
68.3
39.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
30.7
-2.2
3.3
41.9
44.9
Minor BPS
72.6
0.79
1
84.08
30.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012254
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027594
115823377 - 115832608
9232