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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11585830_11586924_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11585830 - 11586924
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAACA
Flanking Amino Acid:
FSSFNADICTMVRHKQNKYP
Intron Amino Acid Position:
512

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85
0.79
0.9
82.2
32.9
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
71.5
0.67
1.5
83.69
29.9

Associated Gene:

Gene:
GPCPD1
Ensembl Gene ID:
ENSAPLG00000008381
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045315
11553279 - 11594197
40919
ENSAPLT00000022439
11558710 - 11594197
35488
ENSAPLT00000008749
11552521 - 11593367
40847