Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11587061_11587367_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11587061 - 11587367

Intron Length:

307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCTGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTATATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

AGGTTTTTAATT

Flanking Amino Acid:

ITFAQFENLLGVNVHSEDLL

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

67.7

40.2

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.1

0.86

0.8

32.8

Minor 5ss

43.4

-0.7

2.9

Minor BPS

67.7

0.63

1.2

74.16

37.3

Associated Gene:

Gene:

GPCPD1

Ensembl Gene ID:

ENSAPLG00000008381

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045315

11553279 - 11594197

40919

ENSAPLT00000022439

11558710 - 11594197

35488

ENSAPLT00000008749

11552521 - 11593367

40847