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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115901292_115901730_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
115901292 - 115901730
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GAGTTTTCATTT
Flanking Amino Acid:
TLPMSLYNFYKAYKNNTLKH
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
100
1.24
0.5
100
0
Major PPT
76.9
0.61
0.9
69.4
36.8
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
45.6
-0.2
1.7
57.26
40.1

Associated Gene:

Gene:
SELENOI
Ensembl Gene ID:
ENSAPLG00000009483
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009909
115897085 - 115908279
11195
ENSAPLT00000044264
115898085 - 115910274
12190
ENSAPLT00000041712
115898085 - 115913561
15477