About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_115907765_115912401_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
115907765 - 115912401
Intron Length:
4637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATAAAA
5'SS Class:
major
3'SS Sequence:
CTCTCGTTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TGTGTTTTGACT
Flanking Amino Acid:
LLQEEQRKLSVQRGGQQPPV
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
74.9
29.4
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
77
0.61
0.8
71
33.3
Minor 5ss
27.4
-2.6
2.7
31.2
42.4
Minor BPS
65.3
0.56
1.4
78.8
37.8

Associated Gene:

Gene:
SELENOI
Ensembl Gene ID:
ENSAPLG00000009483
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041712
115898085 - 115913561
15477